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Taxon

From Wikipedia, in a visual modern way
For the journal, see Taxon (journal). For other uses, see Taxa (disambiguation).
African elephants form the genus Loxodonta, a widely accepted taxon.
African elephants form the genus Loxodonta, a widely accepted taxon.

In biology, a taxon (back-formation from taxonomy; plural taxa) is a group of one or more populations of an organism or organisms seen by taxonomists to form a unit. Although neither is required, a taxon is usually known by a particular name and given a particular ranking, especially if and when it is accepted or becomes established. It is very common, however, for taxonomists to remain at odds over what belongs to a taxon and the criteria used for inclusion. If a taxon is given a formal scientific name, its use is then governed by one of the nomenclature codes specifying which scientific name is correct for a particular grouping.

Initial attempts at classifying and ordering organisms (plants and animals) were set forth in Carl Linnaeus's system in Systema Naturae, 10th edition (1758),[1] as well as an unpublished work by Bernard and Antoine Laurent de Jussieu. The idea of a unit-based system of biological classification was first made widely available in 1805 in the introduction of Jean-Baptiste Lamarck's Flore françoise, and Augustin Pyramus de Candolle's Principes élémentaires de botanique. Lamarck set out a system for the "natural classification" of plants. Since then, systematists continue to construct accurate classifications encompassing the diversity of life; today, a "good" or "useful" taxon is commonly taken to be one that reflects evolutionary relationships.[note 1]

Many modern systematists, such as advocates of phylogenetic nomenclature, use cladistic methods that require taxa to be monophyletic (all descendants of some ancestor). Their basic unit, therefore, the clade is equivalent to the taxon, assuming that taxa should reflect evolutionary relationships. Similarly, among those contemporary taxonomists working with the traditional Linnean (binomial) nomenclature, few propose taxa they know to be paraphyletic.[2] An example of a long-established taxon that is not also a clade is the class Reptilia, the reptiles; birds and mammals are the descendants of animals traditionally classed as reptiles, but neither are included in the Reptilia (birds are traditionally placed in the class Aves, and mammals in the class Mammalia).[3]

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Biology

Biology

Biology is the scientific study of life. It is a natural science with a broad scope but has several unifying themes that tie it together as a single, coherent field. For instance, all organisms are made up of cells that process hereditary information encoded in genes, which can be transmitted to future generations. Another major theme is evolution, which explains the unity and diversity of life. Energy processing is also important to life as it allows organisms to move, grow, and reproduce. Finally, all organisms are able to regulate their own internal environments.

Back-formation

Back-formation

In etymology, back-formation is the process or result of creating a new word via inflection, typically by removing or substituting actual or supposed affixes from a lexical item, in a way that expands the number of lexemes associated with the corresponding root word. The resulting is called a back-formation, a term coined by James Murray in 1889.

Carl Linnaeus

Carl Linnaeus

Carl Linnaeus, also known after his ennoblement in 1761 as Carl von Linné, was a Swedish botanist, zoologist, taxonomist, and physician who formalised binomial nomenclature, the modern system of naming organisms. He is known as the "father of modern taxonomy". Many of his writings were in Latin; his name is rendered in Latin as Carolus Linnæus and, after his 1761 ennoblement, as Carolus a Linné.

Linnaean taxonomy

Linnaean taxonomy

Linnaean taxonomy can mean either of two related concepts:The particular form of biological classification (taxonomy) set up by Carl Linnaeus, as set forth in his Systema Naturae (1735) and subsequent works. In the taxonomy of Linnaeus there are three kingdoms, divided into classes, and they, in turn, into lower ranks in a hierarchical order. A term for rank-based classification of organisms, in general. That is, taxonomy in the traditional sense of the word: rank-based scientific classification. This term is especially used as opposed to cladistic systematics, which groups organisms into clades. It is attributed to Linnaeus, although he neither invented the concept of ranked classification nor gave it its present form. In fact, it does not have an exact present form, as "Linnaean taxonomy" as such does not really exist: it is a collective (abstracting) term for what actually are several separate fields, which use similar approaches.

Bernard de Jussieu

Bernard de Jussieu

Bernard de Jussieu was a French naturalist, younger brother of Antoine de Jussieu.

Antoine Laurent de Jussieu

Antoine Laurent de Jussieu

Antoine Laurent de Jussieu was a French botanist, notable as the first to publish a natural classification of flowering plants; much of his system remains in use today. His classification was based on an extended unpublished work by his uncle, the botanist Bernard de Jussieu.

Jean-Baptiste Lamarck

Jean-Baptiste Lamarck

Jean-Baptiste Pierre Antoine de Monet, chevalier de Lamarck, often known simply as Lamarck, was a French naturalist, biologist, academic, and soldier. He was an early proponent of the idea that biological evolution occurred and proceeded in accordance with natural laws.

Augustin Pyramus de Candolle

Augustin Pyramus de Candolle

Augustin Pyramus de Candolle was a Swiss botanist. René Louiche Desfontaines launched de Candolle's botanical career by recommending him at a herbarium. Within a couple of years de Candolle had established a new genus, and he went on to document hundreds of plant families and create a new natural plant classification system. Although de Candolle's main focus was botany, he also contributed to related fields such as phytogeography, agronomy, paleontology, medical botany, and economic botany.

Cladistics

Cladistics

Cladistics is an approach to biological classification in which organisms are categorized in groups ("clades") based on hypotheses of most recent common ancestry. The evidence for hypothesized relationships is typically shared derived characteristics (synapomorphies) that are not present in more distant groups and ancestors. However, from an empirical perspective, common ancestors are inferences based on a cladistic hypothesis of relationships of taxa whose character states can be observed. Theoretically, a last common ancestor and all its descendants constitute a (minimal) clade. Importantly, all descendants stay in their overarching ancestral clade. For example, if the terms worms or fishes were used within a strict cladistic framework, these terms would include humans. Many of these terms are normally used paraphyletically, outside of cladistics, e.g. as a 'grade', which are fruitless to precisely delineate, especially when including extinct species. Radiation results in the generation of new subclades by bifurcation, but in practice sexual hybridization may blur very closely related groupings.

Clade

Clade

In biological phylogenetics, a clade, also known as a monophyletic group or natural group, is a grouping of organisms that are monophyletic – that is, composed of a common ancestor and all its lineal descendants – on a phylogenetic tree. In the taxonomical literature, sometimes the Latin form cladus is used rather than the English form.

Class (biology)

Class (biology)

In biological classification, class is a taxonomic rank, as well as a taxonomic unit, a taxon, in that rank. It is a group of related taxonomic orders. Other well-known ranks in descending order of size are life, domain, kingdom, phylum, order, family, genus, and species, with class fitting between phylum and order.

Bird

Bird

Birds are a group of warm-blooded vertebrates constituting the class Aves, characterised by feathers, toothless beaked jaws, the laying of hard-shelled eggs, a high metabolic rate, a four-chambered heart, and a strong yet lightweight skeleton. Birds live worldwide and range in size from the 5.5 cm (2.2 in) bee hummingbird to the 2.8 m common ostrich. There are about ten thousand living species, more than half of which are passerine, or "perching" birds. Birds have wings whose development varies according to species; the only known groups without wings are the extinct moa and elephant birds. Wings, which are modified forelimbs, gave birds the ability to fly, although further evolution has led to the loss of flight in some birds, including ratites, penguins, and diverse endemic island species. The digestive and respiratory systems of birds are also uniquely adapted for flight. Some bird species of aquatic environments, particularly seabirds and some waterbirds, have further evolved for swimming.

History

The term taxon was first used in 1926 by Adolf Meyer-Abich for animal groups, as a back-formation from the word taxonomy; the word taxonomy had been coined a century before from the Greek components τάξις (taxis, meaning arrangement) and -νομία (-nomia meaning method).[4][5] For plants, it was proposed by Herman Johannes Lam in 1948, and it was adopted at the VII International Botanical Congress, held in 1950.[6]

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Taxonomy (biology)

Taxonomy (biology)

In biology, taxonomy is the scientific study of naming, defining (circumscribing) and classifying groups of biological organisms based on shared characteristics. Organisms are grouped into taxa and these groups are given a taxonomic rank; groups of a given rank can be aggregated to form a more inclusive group of higher rank, thus creating a taxonomic hierarchy. The principal ranks in modern use are domain, kingdom, phylum, class, order, family, genus, and species. The Swedish botanist Carl Linnaeus is regarded as the founder of the current system of taxonomy, as he developed a ranked system known as Linnaean taxonomy for categorizing organisms and binomial nomenclature for naming organisms.

Scientific method

Scientific method

The scientific method is an empirical method for acquiring knowledge that has characterized the development of science since at least the 17th century It involves careful observation, applying rigorous skepticism about what is observed, given that cognitive assumptions can distort how one interprets the observation. It involves formulating hypotheses, via induction, based on such observations; the testability of hypotheses, experimental and the measurement-based statistical testing of deductions drawn from the hypotheses; and refinement of the hypotheses based on the experimental findings. These are principles of the scientific method, as distinguished from a definitive series of steps applicable to all scientific enterprises.

Herman Johannes Lam

Herman Johannes Lam

Herman Johannes Lam was a Dutch botanist.

International Botanical Congress

International Botanical Congress

International Botanical Congress (IBC) is an international meeting of botanists in all scientific fields, authorized by the International Association of Botanical and Mycological Societies (IABMS) and held every six years, with the location rotating between different continents. The current numbering system for the congresses starts from the year 1900; the XVIII IBC was held in Melbourne, Australia, 24–30 July 2011, and the XIX IBC was held in Shenzhen, China, 23–29 July 2017.

Definition

The glossary of the International Code of Zoological Nomenclature (1999) defines[7] a

  • "taxon, (pl. taxa), n.
A taxonomic unit, whether named or not: i.e. a population, or group of populations of organisms which are usually inferred to be phylogenetically related and which have characters in common which differentiate (q.v.) the unit (e.g. a geographic population, a genus, a family, an order) from other such units. A taxon encompasses all included taxa of lower rank (q.v.) and individual organisms. [...]"

Ranks

The hierarchy of biological classification's eight major taxonomic ranks. Intermediate minor rankings are not shown.LifeDomainKingdomPhylumClassOrderFamilyGenusSpecies
The hierarchy of biological classification's eight major taxonomic ranks. Intermediate minor rankings are not shown.

A taxon can be assigned a taxonomic rank, usually (but not necessarily) when it is given a formal name.

"Phylum" applies formally to any biological domain, but traditionally it was always used for animals, whereas "division" was traditionally often used for plants, fungi, etc.

A prefix is used to indicate a ranking of lesser importance. The prefix super- indicates a rank above, the prefix sub- indicates a rank below. In zoology, the prefix infra- indicates a rank below sub-. For instance, among the additional ranks of class are superclass, subclass and infraclass.

Rank is relative, and restricted to a particular systematic schema. For example, liverworts have been grouped, in various systems of classification, as a family, order, class, or division (phylum). The use of a narrow set of ranks is challenged by users of cladistics; for example, the mere 10 ranks traditionally used between animal families (governed by the International Code of Zoological Nomenclature (ICZN)) and animal phyla (usually the highest relevant rank in taxonomic work) often cannot adequately represent the evolutionary history as more about a lineage's phylogeny becomes known.

In addition, the class rank is quite often not an evolutionary but a phenetic or paraphyletic group and as opposed to those ranks governed by the ICZN (family-level, genus-level and species-level taxa), can usually not be made monophyletic by exchanging the taxa contained therein. This has given rise to phylogenetic taxonomy and the ongoing development of the PhyloCode, which has been proposed as a new alternative to replace Linnean classification and govern the application of names to clades. Many cladists do not see any need to depart from traditional nomenclature as governed by the ICZN, International Code of Nomenclature for algae, fungi, and plants, etc.

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Taxonomic rank

Taxonomic rank

In biology, taxonomic rank is the relative level of a group of organisms in an ancestral or hereditary hierarchy. A common system of biological classification (taxonomy) consists of species, genus, family, order, class, phylum, kingdom, domain. While older approaches to taxonomic classification were phenomenological, forming groups on the basis of similarities in appearance, organic structure and behaviour, methods based on genetic analysis have opened the road to cladistics.

Phylum

Phylum

In biology, a phylum is a level of classification or taxonomic rank below kingdom and above class. Traditionally, in botany the term division has been used instead of phylum, although the International Code of Nomenclature for algae, fungi, and plants accepts the terms as equivalent. Depending on definitions, the animal kingdom Animalia contains about 31 phyla, the plant kingdom Plantae contains about 14 phyla, and the fungus kingdom Fungi contains about 8 phyla. Current research in phylogenetics is uncovering the relationships between phyla, which are contained in larger clades, like Ecdysozoa and Embryophyta.

Domain (biology)

Domain (biology)

In biological taxonomy, a domain, also dominion, superkingdom, realm, or empire, is the highest taxonomic rank of all organisms taken together. It was introduced in the three-domain system of taxonomy devised by Carl Woese, Otto Kandler and Mark Wheelis in 1990.

Plant

Plant

Plants are predominantly photosynthetic eukaryotes, forming the kingdom Plantae. Most of them are multicellular. Historically, the plant kingdom encompassed all living things that were not animals, and included algae and fungi. All current definitions exclude the fungi and some of the algae. By one definition, plants form the clade Viridiplantae which consists of the green algae and the Embryophyta or land plants. The latter include the hornworts, liverworts, mosses, lycophytes, ferns, conifers and other gymnosperms, and the flowering plants. A definition based on genomes includes the Viridiplantae, along with the red algae and the glaucophytes, in the clade Archaeplastida.

Fungus

Fungus

A fungus is any member of the group of eukaryotic organisms that includes microorganisms such as yeasts and molds, as well as the more familiar mushrooms. These organisms are classified as a kingdom, separately from the other eukaryotic kingdoms, which by one traditional classification include Plantae, Animalia, Protozoa, and Chromista.

Class (biology)

Class (biology)

In biological classification, class is a taxonomic rank, as well as a taxonomic unit, a taxon, in that rank. It is a group of related taxonomic orders. Other well-known ranks in descending order of size are life, domain, kingdom, phylum, order, family, genus, and species, with class fitting between phylum and order.

Marchantiophyta

Marchantiophyta

The Marchantiophyta are a division of non-vascular land plants commonly referred to as hepatics or liverworts. Like mosses and hornworts, they have a gametophyte-dominant life cycle, in which cells of the plant carry only a single set of genetic information.

Cladistics

Cladistics

Cladistics is an approach to biological classification in which organisms are categorized in groups ("clades") based on hypotheses of most recent common ancestry. The evidence for hypothesized relationships is typically shared derived characteristics (synapomorphies) that are not present in more distant groups and ancestors. However, from an empirical perspective, common ancestors are inferences based on a cladistic hypothesis of relationships of taxa whose character states can be observed. Theoretically, a last common ancestor and all its descendants constitute a (minimal) clade. Importantly, all descendants stay in their overarching ancestral clade. For example, if the terms worms or fishes were used within a strict cladistic framework, these terms would include humans. Many of these terms are normally used paraphyletically, outside of cladistics, e.g. as a 'grade', which are fruitless to precisely delineate, especially when including extinct species. Radiation results in the generation of new subclades by bifurcation, but in practice sexual hybridization may blur very closely related groupings.

Species

Species

In biology, a species is often defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring, typically by sexual reproduction. It is the basic unit of classification and a taxonomic rank of an organism, as well as a unit of biodiversity. Other ways of defining species include their karyotype, DNA sequence, morphology, behaviour, or ecological niche. In addition, paleontologists use the concept of the chronospecies since fossil reproduction cannot be examined.

PhyloCode

PhyloCode

The International Code of Phylogenetic Nomenclature, known as the PhyloCode for short, is a formal set of rules governing phylogenetic nomenclature. Its current version is specifically designed to regulate the naming of clades, leaving the governance of species names up to the rank-based nomenclature codes.

Clade

Clade

In biological phylogenetics, a clade, also known as a monophyletic group or natural group, is a grouping of organisms that are monophyletic – that is, composed of a common ancestor and all its lineal descendants – on a phylogenetic tree. In the taxonomical literature, sometimes the Latin form cladus is used rather than the English form.

International Code of Nomenclature for algae, fungi, and plants

International Code of Nomenclature for algae, fungi, and plants

The International Code of Nomenclature for algae, fungi, and plants is the set of rules and recommendations dealing with the formal botanical names that are given to plants, fungi and a few other groups of organisms, all those "traditionally treated as algae, fungi, or plants". It was formerly called the International Code of Botanical Nomenclature (ICBN); the name was changed at the International Botanical Congress in Melbourne in July 2011 as part of the Melbourne Code which replaced the Vienna Code of 2005.

Source: "Taxon", Wikipedia, Wikimedia Foundation, (2023, March 18th), https://en.wikipedia.org/wiki/Taxon.

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Further Reading

Clade

Linnaean taxonomy

Monophyly

Paraphyly

Taxonomy (biology)

International Code of Zoological Nomenclature

Type (biology)

Incertae sedis

Taxonomic rank
See also
Notes
  1. ^ This is not considered as mandatory, however, as indicated by terms for non-monophyletic groupings ("invertebrates", "conifers", "fish", etc).
References
  1. ^ Quammen, David (June 2007). "A Passion for Order". National Geographic Magazine. Retrieved 27 April 2013.
  2. ^ de Queiroz, K & J Gauthier (1990). "Phylogeny as a Central Principle in Taxonomy: Phylogenetic Definitions of Taxon Names" (PDF). Systematic Zoology. 39 (4): 307–322. doi:10.2307/2992353. JSTOR 2992353.
  3. ^ Romer, A. S. (1970) [1949]. The Vertebrate Body (4th .
  4. ^ Sylvain Adnet; Brigitte Senut; Thierry Tortosa; Romain Amiot, Julien Claude, Sébastien Clausen, Anne-Laure Decombeix, Vincent Fernandez, Grégoire Métais, Brigitte Meyer-Berthaud, Serge Muller (25 September 2013). Principes de paléontologie. Dunod. p. 122. ISBN 978-2-10-070313-5. La taxinomie s'enrichit avec l'invenition du mot «taxon» par Adolf Meyer-Abich, naturaliste allemand, dans sa Logik der morphologie, im Rahmen einer Logik der gesamten Biologie (1926) [Translation: Taxonomy is enriched by the invention of the word "taxon" by Adolf Meyer-Abich, German naturalist, in his Logik der morphologie, im Rahmen einer Logik der gesamten Biologie (1926).]{{cite book}}: CS1 maint: multiple names: authors list (link)
  5. ^ Meyer-Abich, Adolf (1926). Logik der Morphologie im Rahmen einer Logik der gesamten Biologie. Springer-Verlag. p. 127. ISBN 978-3-642-50733-5.
  6. ^ Naik, V. N. (1984). Taxonomy of Angiosperms. Tata McGraw Hill, New Delhi, p. 2.
  7. ^ ICZN (1999) International Code of Zoological Nomenclature. Glossary Archived 2005-01-03 at the Wayback Machine. International Commission on Zoological Nomenclature.
External links
  • The dictionary definition of taxon at Wiktionary
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